PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma93g01000.1
Common NameZOSMA_93G01000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 492aa    MW: 53318.9 Da    PI: 6.4503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma93g01000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09309357355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Zosma93g01000.1 309 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 357
                      58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.56E-11304361No hitNo description
SuperFamilySSF474595.76E-17304375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16307373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6309357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDLREKDKFV LDRDSENHLN YNPSGISADW QMGCVPTSNS NNSISMGVGQ ATSCPSASMV  60
DSFSCSTLWD DHSSNSHNLG ISLNTTTNAS NNVHIIKPIP PPSRLDMGGW NPSDHISKDG  120
VFQQTSIGIL PPGGLSSQFP SDSTFIEQAA RLSCFGSGTF TSMLSPFDTS NSYFTQSRRS  180
DPNILEGHNR SNGEGSPMNS QKDTTSSQRV GEHGNTEFNG GGSGQEEIPL EKSVAKKRKR  240
NTQEIEIGQP MNDKPTEISK ENNGVGHKYE PNASSPLGAK NNGKQAKDGG DPAKEDYIHV  300
RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV  360
EFLSMKLATV NPQLDFNLEG FVSKDIRAGT SSAIGFTPDL AHHFLNPTSQ GGLTQSGVFG  420
VGPPSPDAFR RAINGQLNSP NTFKEAKHQM GISCDDDIQN ILSQMGFGNN LPLNIQQDSN  480
DKTRSSDGFT M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943352.11e-137PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A0K9NIR20.0A0A0K9NIR2_Z
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-84bHLH family protein